cnslab.cnsnetwork

Class PlotResult

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Frame

javax.swing.JFrame

org.jfree.ui.ApplicationFrame

cnslab.cnsnetwork.PlotResult

All Implemented Interfaces:

ActionListener, WindowListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, RootPaneContainer, WindowConstants

public class PlotResult
extends org.jfree.ui.ApplicationFrame
implements ActionListener

Class to plot the recorded data by using Java Free chart.

Version:

$Date: 2012-08-04 13:43:22 -0500 (Sat, 04 Aug 2012) $ $Rev: 104 $ $Author: croft $

Author:

Yi Dong, David Wallace Croft, M.Sc., Jeremy Cohen

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JFrame

JFrame.AccessibleJFrame

Nested classes/interfaces inherited from class java.awt.Frame

Frame.AccessibleAWTFrame

Nested classes/interfaces inherited from class java.awt.Window

Window.AccessibleAWTWindow, Window.Type

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field and Description
int	currExp
int	currField
int	currFrame
int	currIntra
double[][][]	dataField bin, x, y
double	fieldBinSize
double	fieldMax
ucar.ma2.ArrayChar.D2	fieldNames field electrodes names
ucar.ma2.ArrayChar.D2	intraNames intracellular electrodes names
static ucar.nc2.NetcdfFile	ncfile
int	nowValue
static int	numExp number of sub exps
static int	numField number of field electrode
static int	numIntra number of intracellular electrodes
static int	numVector number of vector electrode
int	picture
org.jfree.data.xy.DefaultXYZDataset	show
static ucar.ma2.ArrayChar.D2	subexpNames the names of subexperiments
ucar.ma2.ArrayChar.D2	suNames single unit names;
org.jfree.chart.renderer.AbstractRenderer	suRender
int	suSeries number of single unit ele
String	titleField
ucar.ma2.ArrayChar.D2	vectorNames vector electrodes names
static int	xEdge xEdge length
double	xUnit
static int	yEdge yEdge length;
double	yUnit

Fields inherited from class javax.swing.JFrame

accessibleContext, EXIT_ON_CLOSE, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Frame

CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, HIDE_ON_CLOSE

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor and Description
PlotResult()
PlotResult(String st)

Method Summary

Methods

Modifier and Type	Method and Description
void	actionPerformed(ActionEvent e)
JPanel	createFieldPanel() create the panel
JPanel	createIntraPanel() create the intracellular recorder panel
JPanel	createMUPanel(int i) create the panel
JPanel	createSuPanel(int i)
JPanel	createVectorPanel() create the panel
static void	exportFile() generate the EPS files
static void	fieldPlot()
void	getFrame(int subExp, int recorderType, int recorderID)
static void	init() initialize the plotting class
static void	init(String fileName)
static void	intraPlot()
static void	main(String[] args)
static void	muPlot()
void	readField(int expId, int fieldId) populate the field electrode data structure.
void	readIntra(int expId, int intraId)
org.jfree.data.xy.XYDataset	readMU(int expId)
org.jfree.data.statistics.DefaultMultiValueCategoryDataset	readSu()
org.jfree.data.statistics.DefaultMultiValueCategoryDataset	readSu(int expId)
void	readVector(int expId, int fieldId) populate the vector electrode data structure.
static void	stop()
static void	suPlot()
static void	vectorPlot()

Methods inherited from class org.jfree.ui.ApplicationFrame

windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JFrame

addImpl, createRootPane, frameInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setIconImage, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Frame

addNotify, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setBackground, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setOpacity, setResizable, setShape, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, setVisible, show, toBack, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer

getFont, postEvent

Field Detail

nowValue

public int nowValue

suSeries

public int suSeries

number of single unit ele

numExp

public static int numExp

number of sub exps

numField

public static int numField

number of field electrode

numVector

public static int numVector

number of vector electrode

numIntra

public static int numIntra

number of intracellular electrodes

xEdge

public static int xEdge

xEdge length

yEdge

public static int yEdge

yEdge length;

subexpNames

public static ucar.ma2.ArrayChar.D2 subexpNames

the names of subexperiments

picture

public int picture

currExp

public int currExp

currField

public int currField

currIntra

public int currIntra

suNames

public ucar.ma2.ArrayChar.D2 suNames

single unit names;

fieldNames

public ucar.ma2.ArrayChar.D2 fieldNames

field electrodes names

vectorNames

public ucar.ma2.ArrayChar.D2 vectorNames

vector electrodes names

intraNames

public ucar.ma2.ArrayChar.D2 intraNames

intracellular electrodes names

dataField

public double[][][] dataField

bin, x, y

show

public org.jfree.data.xy.DefaultXYZDataset show

fieldMax

public double fieldMax

currFrame

public int currFrame

fieldBinSize

public double fieldBinSize

suRender

public org.jfree.chart.renderer.AbstractRenderer suRender

titleField

public String titleField

xUnit

public double xUnit

yUnit

public double yUnit

ncfile

public static ucar.nc2.NetcdfFile ncfile

Constructor Detail

PlotResult

public PlotResult()
           throws Exception

Throws:

Exception

See Also:

javax.swing.JFrame#PlotResult()

PlotResult

public PlotResult(String st)
           throws Exception

Throws:

Exception

See Also:

ApplicationFrame#PlotResult(String)

Method Detail

main

public static void main(String[] args)
                 throws Exception

Throws:

Exception

actionPerformed

public void actionPerformed(ActionEvent e)

Specified by:

actionPerformed in interface ActionListener

See Also:

ActionListener.actionPerformed(ActionEvent)

readSu

public org.jfree.data.statistics.DefaultMultiValueCategoryDataset readSu()
                                                                  throws Exception

Returns:

single unit data structure

Throws:

Exception

readSu

public org.jfree.data.statistics.DefaultMultiValueCategoryDataset readSu(int expId)
                                                                  throws Exception

Parameters:

expId -

Returns:

single unit data structure

Throws:

Exception

readField

public void readField(int expId,
             int fieldId)
               throws Exception

populate the field electrode data structure.

Parameters:

expId -

fieldId -

Throws:

Exception

readVector

public void readVector(int expId,
              int fieldId)
                throws Exception

populate the vector electrode data structure.

Parameters:

expId -

fieldId -

Throws:

Exception

readMU

public org.jfree.data.xy.XYDataset readMU(int expId)
                                   throws Exception

Parameters:

expId -

Returns:

multiunit electrod data

Throws:

Exception

readIntra

public void readIntra(int expId,
             int intraId)
               throws Exception

Parameters:

expId -

Throws:

Exception

createSuPanel

public JPanel createSuPanel(int i)
                     throws Exception

Parameters:

i -

Returns:

Panel for singlue unit

Throws:

Exception

createMUPanel

public JPanel createMUPanel(int i)
                     throws Exception

create the panel

Parameters:

i -

Returns:

Throws:

Exception

createFieldPanel

public JPanel createFieldPanel()
                        throws Exception

create the panel

Returns:

Throws:

Exception

createIntraPanel

public JPanel createIntraPanel()
                        throws Exception

create the intracellular recorder panel

Returns:

Throws:

Exception

createVectorPanel

public JPanel createVectorPanel()
                         throws Exception

create the panel

Returns:

Throws:

Exception

suPlot

public static void suPlot()
                   throws Exception

Throws:

Exception

muPlot

public static void muPlot()
                   throws Exception

Throws:

Exception

fieldPlot

public static void fieldPlot()
                      throws Exception

Throws:

Exception

vectorPlot

public static void vectorPlot()
                       throws Exception

Throws:

Exception

intraPlot

public static void intraPlot()
                      throws Exception

Throws:

Exception

exportFile

public static void exportFile()
                       throws Exception

generate the EPS files

Throws:

Exception

init

public static void init()
                 throws Exception

initialize the plotting class

Throws:

Exception

init

public static void init(String fileName)
                 throws Exception

Throws:

Exception

stop

public static void stop()
                 throws Exception

Throws:

Exception

getFrame

public void getFrame(int subExp,
            int recorderType,
            int recorderID)
              throws Exception

Throws:

Exception