| Interface | Description |
|---|---|
| NetMessageTag |
To assign meaning to message tags.
|
| Neuron |
Interface for a Neuron object.
|
| Para | |
| ParToDoc | Deprecated |
| Queue<T extends Comparable<T>> |
Priority Queue Structure used in both input and output queue of the
simulation.
|
| Transmissible |
Interface to indicate a class is transmissible by JPVM.
|
| Class | Description |
|---|---|
| AFireEvent |
Same as FireEvent but AFireEvent stored the avalancheId
|
| AInputEvent |
Same as InputEvent but, Avalanch InputEvent stored extra avlanch id and sourceID
|
| AMainSimulator |
Same as MainSimulator but deals with avalanche
|
| ANetHost |
Same as NetHost but deals with avalanche
|
| ANetMessage |
Same as NetMessage, but has some extra information about avalanche
|
| ANetwork |
Same as Network but Avalanche recorder is added.
|
| AvalancheCounter |
Used to count avalanch in the network
|
| Axon |
Neuron Axon, it contains an array of branches.
|
| BKPoissonNeuron |
Background sensory neuron, it generate heterogeneous Poisson spike
trains.
|
| BKPoissonNeuronPara |
Parameter for BKPoissonNeuron.
|
| Branch |
Branch put all the synapses with same synaptic delay and same target
together to reduce the queue size
|
| Experiment |
Experiment consists of sub experiment.
|
| FiboQueue<T extends Comparable<T>> |
Implementation of FiboQueue
|
| FireEvent |
Neuron fire event, it contains the neuron fire time and neuron index.
|
| FitFun | Deprecated |
| FunUtil |
A class of Utility functions.
|
| InputEvent |
Neuron input event, contains input time, branch of synapses and id of
presynaptic neuron.
|
| IntraInfo |
Class stored the information for intracellular recorder.
|
| IntraRecBuffer |
Stored array of neurons which needs to be recorded.
|
| JpvmInfo |
A class to store all the necessary information about Java Parallel
virtual machine.
|
| KeyInput | Deprecated |
| Layer |
Data structure for storing a layer of neurons.
|
| LayerStructure |
Organize layers of neurons.
|
| MainSimulator |
The class for main host, which spawn all the trial hosts and
NetNosts, setup timer to check progress of the simulation and collect
recorded data from all NetHosts.
|
| MiNiNeuron |
MN model with STDP implemented.
|
| MiNiNeuronPara |
MiNiNeuron neuron parameters.
|
| MTreeQueue<T extends Comparable<T>> |
Implement my customized Queue with Red-backtree data structure.
|
| NetHost |
NetHost class.
|
| NetMessage |
The spike message transmitted between Nethosts.
|
| NetRecordSpike |
Message of recorded spikes transmitted from NetHosts to MainHost.
|
| NetTime |
An array of simulation progress times of each of the NetHosts
corresponding to one trial host.
|
| Network |
Network structure to organize all the small pieces (neurons, layers,
axons, recorders, etc.) together.
|
| PInputEvent |
Poisson input events, similar to InputEvent
|
| PlotResult |
Class to plot the recorded data by using Java Free chart.
|
| PMainBK | Deprecated |
| Points | Deprecated |
| PriQueue<T extends Comparable<T>> |
Implement the java provided priority queue
|
| PRun |
The thread used by NetHost to do the real work, i.e. process the queue
events.
|
| RecordBuffer |
A buffer to keep all the recorded spikes for sending to main host.
|
| Recorder |
The class used to record neuron activities.
|
| RecorderData |
The processed recorded data for different electrodes.
|
| RecorderDataLib |
Static method library to support RecorderData.
|
| RecWriter |
Write the recorded data into files.
|
| SIFNeuron |
Implemented simple integrate and fire neuron.
|
| SIFNeuronPara |
The data structure to store parameters of the SIF neuron.
|
| SimpleErrorHandler | |
| SimulatorParser |
Simulator Parser, to parse XML file
|
| SizeID | |
| SpikeBuffer |
Buffer of spikes between min synaptic delay, send all the buffer once.
|
| Stimulus |
Stimulus class contains all types of stimulus.
|
| StringWrap | Deprecated |
| SubExp |
Subexperiment.
|
| SYNNeuron |
Sync neuron (fake neuron, id is the last neuron index),
used to synchronize between NetHosts, used to send half minimum
synaptic delay time ticks, send buffered spikes
|
| TargetID |
Store target host id information.
|
| TimeWeight |
Used for STDP, map from synapse to spike time and relative weight.
|
| TreeQueue<T extends Comparable<T>> |
Implement the tree queue by using Red black queue provided by Java.
|
| TrialHost |
Trial Host class.
|
| UserSenNeuron |
Sensory neuron fire according to user provided file.
|
| UserSenNeuronPara |
Data for user sensory neuron.
|
| VComponent |
Vector recorder component, one layer of neuron, orientation
|
| VComponents |
Combination of Vector components
|
| VSICLIFNeuron |
Implementation of MN model,
Same as VSICLIFNeuronV2, but no STDP is available.
|
| VSICLIFNeuronPara |
VSICLIFNeuron parameters.
|
| VSICLIFNeuronParaV2 |
VSICLIFNeuronV2 neuron parameters.
|
| VSICLIFNeuronV2 |
MN model with STDP implemented.
|