cnslab.cnsnetwork

Class Recorder

java.lang.Object

cnslab.cnsnetwork.Recorder

All Implemented Interfaces:

Transmissible, Serializable

public final class Recorder
extends Object
implements Serializable, Transmissible

The class used to record neuron activities.

Version:

$Date: 2012-08-04 13:43:22 -0500 (Sat, 04 Aug 2012) $ $Rev: 104 $ $Author: croft $

Author:

Yi Dong, David Wallace Croft

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
ArrayList<ArrayList<Integer>>	currChannel Intracelluar electrodes, the current channels that needs to be recorded.
ArrayList<Layer>	fieldEle
ArrayList<String>	fieldNames
double	fieldTimeBinSize
ArrayList<ArrayList<Integer>>	intraEle Intracelluar electrodes, pool the inner arraylist of neurons info together
ArrayList<String>	intraNames
double	intraTimeBinSize
ArrayList<String>	multiNames Multi unit recorder names
ArrayList<ArrayList<Integer>>	multiUnit Multi unit array, stored the array of recorded index of neurons
ArrayList<ArrayList<String>>	neuronNames Multi unit array, stored the array of recorded neuron names
String	outputFile
boolean	plot
SimulatorParser	simulatorParser
ArrayList<Integer>	singleUnit Single unit array, stored the array of recorded index of neurons
ArrayList<String>	suNames Single unit name array
double	timeBinSize time resolution
ArrayList<String>	vectorNames
double	vectorTimeBinSize
ArrayList<VComponents>	vectorUnit

Constructor Summary

Constructors

Constructor and Description
Recorder(SimulatorParser simulatorParser, boolean plot)

Method Summary

Methods

Modifier and Type	Method and Description
VComponents	addComs()
ArrayList<Integer>	addLine(int x1, int y1, int x2, int y2, String pre, String suf, ArrayList<String> names) Add a line of neurons to be recorded
ArrayList<Integer>	addLine(int x1, int y1, int x2, int y2, String pre, String suf, int hostId, ArrayList<String> names) Add a line of neurons to be recorded
ArrayList<Integer>	addSquare(int x1, int y1, int x2, int y2, String pre, String suf, ArrayList<String> names) Add a square of neurons to be recorded.
ArrayList<Integer>	addSquare(int x1, int y1, int x2, int y2, String pre, String suf, int hostId, ArrayList<String> names) Add a square of neurons to be recorded.
int	intraIndex(int neuron)
int[]	intraNeurons()
void	setLayerNeurons(Layer layer) Set the layer of neurons which needs to be recorded.
void	setLayerNeurons(Layer layer, int hostId) Set the layer of neurons which needs to be recorded.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

outputFile

public String outputFile

plot

public boolean plot

simulatorParser

public SimulatorParser simulatorParser

singleUnit

public ArrayList<Integer> singleUnit

Single unit array, stored the array of recorded index of neurons

suNames

public ArrayList<String> suNames

Single unit name array

multiUnit

public ArrayList<ArrayList<Integer>> multiUnit

Multi unit array, stored the array of recorded index of neurons

neuronNames

public ArrayList<ArrayList<String>> neuronNames

Multi unit array, stored the array of recorded neuron names

multiNames

public ArrayList<String> multiNames

Multi unit recorder names

timeBinSize

public double timeBinSize

time resolution

fieldEle

public ArrayList<Layer> fieldEle

fieldNames

public ArrayList<String> fieldNames

fieldTimeBinSize

public double fieldTimeBinSize

vectorUnit

public ArrayList<VComponents> vectorUnit

vectorNames

public ArrayList<String> vectorNames

vectorTimeBinSize

public double vectorTimeBinSize

intraEle

public ArrayList<ArrayList<Integer>> intraEle

Intracelluar electrodes, pool the inner arraylist of neurons info together

currChannel

public ArrayList<ArrayList<Integer>> currChannel

Intracelluar electrodes, the current channels that needs to be recorded.

intraNames

public ArrayList<String> intraNames

intraTimeBinSize

public double intraTimeBinSize

Constructor Detail

Recorder

public Recorder(SimulatorParser simulatorParser,
        boolean plot)

Method Detail

intraIndex

public int intraIndex(int neuron)

intraNeurons

public int[] intraNeurons()

addComs

public VComponents addComs()

setLayerNeurons

public void setLayerNeurons(Layer layer,
                   int hostId)

Set the layer of neurons which needs to be recorded.

Parameters:

layer -

setLayerNeurons

public void setLayerNeurons(Layer layer)

Set the layer of neurons which needs to be recorded.

addLine

public ArrayList<Integer> addLine(int x1,
                         int y1,
                         int x2,
                         int y2,
                         String pre,
                         String suf,
                         ArrayList<String> names)

Add a line of neurons to be recorded

addSquare

public ArrayList<Integer> addSquare(int x1,
                           int y1,
                           int x2,
                           int y2,
                           String pre,
                           String suf,
                           ArrayList<String> names)

Add a square of neurons to be recorded.

Parameters:

x1 -

y1 -

x2 -

y2 -

pre -

suf -

names -

addLine

public ArrayList<Integer> addLine(int x1,
                         int y1,
                         int x2,
                         int y2,
                         String pre,
                         String suf,
                         int hostId,
                         ArrayList<String> names)

Add a line of neurons to be recorded

Parameters:

x1 -

y1 -

x2 -

y2 -

pre -

suf -

hostId -

names -

addSquare

public ArrayList<Integer> addSquare(int x1,
                           int y1,
                           int x2,
                           int y2,
                           String pre,
                           String suf,
                           int hostId,
                           ArrayList<String> names)

Add a square of neurons to be recorded.

Parameters:

x1 -

y1 -

x2 -

y2 -

pre -

suf -

hostId -

names -